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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2946s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 160aa MW: 17952.3 Da PI: 8.6817 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 14 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +ykGVr +k +g+WvAeIr p++ r r++lg++ +a+eAa+a++aa ++l+g+ SapurV1A.2946s0020.1.p 14 RYKGVRMRK-WGKWVAEIRQPNS---RNRIWLGSYNSADEAARAYDAAVLCLRGP 64 69*****99.**********943...49************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-13 | 14 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-22 | 14 | 73 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-34 | 14 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-30 | 14 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.708 | 14 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.52E-27 | 14 | 71 | No hit | No description |
PRINTS | PR00367 | 4.6E-9 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-9 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MVRERRERGD DNGRYKGVRM RKWGKWVAEI RQPNSRNRIW LGSYNSADEA ARAYDAAVLC 60 LRGPSATFNF PTNMPEIPAT TEVLSPTQIR EVASRHARRR GAVELAERIV RPGLCEVPSG 120 MTGEVYLGGG ENMAEFKDGI FSGAYYQTPD LELEFPRDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-13 | 15 | 74 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-13 | 15 | 71 | 6 | 63 | ATERF1 |
3gcc_A | 3e-13 | 15 | 71 | 6 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011026594.1 | 6e-91 | PREDICTED: ethylene-responsive transcription factor ERF016-like | ||||
Swissprot | Q9C591 | 2e-34 | ERF16_ARATH; Ethylene-responsive transcription factor ERF016 | ||||
TrEMBL | A9PLA5 | 1e-87 | A9PLA5_POPTR; RAP2-like protein | ||||
STRING | POPTR_0018s00700.1 | 3e-87 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15296 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 6e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2946s0020.1.p |